During the Covid-19 outbreak, synchronous learning has become one of the new learning modalities in the Philippines. The study used a single case study that focused on the participants' difficulties and coping mechanisms relative to synchronous learning. Ten (10) Grade 6 pupils of a laboratory school in Tacloban City were purposely selected as participants of the study. The study data were collected using an interview guide and focus group discussion through google meet, and data were analyzed using Wa-Mbaleka (2018) method. The study is guided by the flexible learning theory of Gearhart (2008) and E-learning theory (David, 2015). Findings showed that difficulties of synchronous learning include: technological dilemmas, unfulfilled house commitments, lack of digital materials, and absence of self-management. Furthermore, coping mechanisms include resilient social support and upholding educational accountability. Findings will be used to understand learners' perceptions regarding online learning and enhance online strategies and materials.